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Thanks Tom from the controller-dev list for helping me with this. Just posting the answer here for the community.

There is a cfg file in the etc directory, org.opendaylight.controller.cluster.datastore.cfg, that was added in Lithium for configuring the clustered datastore in lieu of changing the 05-clustering.xml file to make preserving changes on upgrade easier. The cfg file overrides settings in 05-clustering.xml. You'll need to set "operational.persistent=true".

Tried with this and i worked.